I use SEO Elite for link building but do not use the automatic link page creation feature as that leaves footprints behind but do use it for finding new link partners and keeping tract of the ones I have.
I would also recommend WebCEO Free version to help with your pages on page SEO as it just gives you recommendations based on current SE guidlines and will not leave any footprint on your page since you must make any changes it suggests manually yourself. It also has a link popularity, keyword suggestion, PPC management, and keyword rank checking tools.
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